Hi Kasper, According to https://github.com/Bioconductor/BBS/blob/9ebb2cf20e70e4bebf24a2a824a67193de821b08/3.19/bioc-mac-arm64/kjohnson3/config.sh#L17-L20 the machine has 24 vCPUs. The automatic/weekly build utilizes 12-16 out of those at any given time! With the respective RAM and disk usage.
By "by hand" do you mean to run the build/check of a given package on a "calm" machine ? It would be expected that it will be faster if it has all/most resources just for it. Martin On Wed, Feb 7, 2024 at 5:12 PM Kasper Daniel Hansen < kasperdanielhan...@gmail.com> wrote: > To be a bit more clear and vague at the same time: currently, some of our > macOS builders exhibit weird slowdowns when the build system is run > automatically compared to running builds "by hand". This is pretty weird, > and hopefully we can figure out the cause and fix it. Specifically, builds > on kjohnson3 is (at the moment) weirdly slow. > > Best, > Kasper > > On Wed, Feb 7, 2024 at 7:24 AM Jacopo Ronchi <jacopo.ron...@unimib.it> > wrote: > > > Ok, understood. Thanks > > > > Il mer 7 feb 2024, 12:46 Vincent Carey <st...@channing.harvard.edu> ha > > scritto: > > > > > We need a bit of internal discussion before committing to this > notion. I > > > will get back to the list on this. > > > > > > On Wed, Feb 7, 2024 at 6:34 AM Jacopo Ronchi <jacopo.ron...@unimib.it> > > > wrote: > > > > > >> Dear Vincent, thanks for your answer. So, at least for now, can I > ignore > > >> the warning on macOS for the submission of MIRit? > > >> > > >> Il mer 7 feb 2024, 12:26 Vincent Carey <st...@channing.harvard.edu> > ha > > >> scritto: > > >> > > >>> Thanks Jacopo. You shouldn't have to struggle. We are aware of > > >>> disparities of platform > > >>> performance and are working to improve the build process. It will > take > > >>> time. I believe that > > >>> achievement of acceptable timings on the linux platform should be the > > >>> key goal at > > >>> this time. > > >>> > > >>> On Wed, Feb 7, 2024 at 5:18 AM Jacopo Ronchi < > jacopo.ron...@unimib.it> > > >>> wrote: > > >>> > > >>>> Dear developers, > > >>>> > > >>>> I am struggling to reduce R CMD check times for my package, MIRit, > on > > >>>> macOS. The check on linux takes 4 minutes, while on macOS it needs > > 9/10 > > >>>> minutes. I have severely reduced the size of examples and tests, > which > > >>>> now > > >>>> use smaller datasets and cached resources. > > >>>> > > >>>> On linux, unit tests require 30 seconds more or less, and examples > 40 > > >>>> seconds. On the other hand, macOS tests take 100 seconds, and 75 for > > the > > >>>> examples. The issue is that sometimes the check runs in less than 10 > > >>>> minutes, sometimes it needs a little bit more. > > >>>> > > >>>> However I am out of ideas on how to further reduce examples and > > tests... > > >>>> The vignette is really extensive, but since SPB uses the > > "--no-vignette" > > >>>> option this should not influence heavily on this behavior, at least > to > > >>>> my > > >>>> understanding. > > >>>> > > >>>> Sorry for bothering you, > > >>>> Best regards, > > >>>> Jacopo > > >>>> > > >>>> [[alternative HTML version deleted]] > > >>>> > > >>>> _______________________________________________ > > >>>> Bioc-devel@r-project.org mailing list > > >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > >>>> > > >>> > > >>> The information in this e-mail is intended only for the person to > whom > > >>> it is > > >>> addressed. If you believe this e-mail was sent to you in error and > the > > >>> e-mail > > >>> contains patient information, please contact the Partners Compliance > > HelpLine > > >>> at > > >>> http://www.partners.org/complianceline . If the e-mail was sent to > you > > >>> in error > > >>> but does not contain patient information, please contact the sender > and > > >>> properly > > >>> dispose of the e-mail. > > >> > > >> > > > The information in this e-mail is intended only for th...{{dropped:16}} > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > -- > Best, > Kasper > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
