The new report is available:https://bioconductor.org/checkResults/3.19/bioc-LATEST/MSA2dist/.
Jennifer Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Herv� Pag�s <hpages.on.git...@gmail.com> Sent: Wednesday, April 24, 2024 12:27 PM To: Kristian Ullrich <ullr...@evolbio.mpg.de>; bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] nebbiolo1 - build report * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * As for the error you will see when today's report gets published it's caused by the recent move of the pairwiseAlignment stuff from Biostrings to the new pwalign package. I fixed it in MSA2dist 1.7.6 so it will go away in tomorrow's report. Please resync your GitHub repo with git.bioconductor.org when you get a chance. H. On 4/24/24 09:18, Herv� Pag�s wrote: > > Hi Kristian, > > I believe that this is because the new report didn't get published yet > so the links in the email you received still points to yesterday's > report. We're investigating. > > Best, > > H. > > On 4/24/24 09:10, Kristian Ullrich wrote: >> Hi, >> >> I just got an email from bbs: >> >> Hi MSA2dist maintainer, >> >> According to the Multiple platform build/check report for BioC 3.19, >> the MSA2dist package has the following problem(s): >> >> o ERROR for 'R CMD INSTALL' on nebbiolo1. See the details here: >> >> https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.19%2Fbioc-LATEST%2FMSA2dist%2Fnebbiolo1-install.html__%3B!!PxiZbSOawA!JXtUuFyazbia9xcI2poFmD8RwdzAoeA2p7qo-3E8uEECTMUF2RvOae17q7c7nyyINmLgkWqYpfynvaOjuqOgs8-a3E7pTy5hhQPfEg%24&data=05%7C02%7Cjennifer.wokaty%40sph.cuny.edu%7C50043778ddea452e058a08dc647c75f6%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638495732936269396%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=xrT6KZN0S9x5lltJLUTmmitRNT881m0wgfoBhW0OhMU%3D&reserved=0<https://urldefense.com/v3/__https://bioconductor.org/checkResults/3.19/bioc-LATEST/MSA2dist/nebbiolo1-install.html__;!!PxiZbSOawA!JXtUuFyazbia9xcI2poFmD8RwdzAoeA2p7qo-3E8uEECTMUF2RvOae17q7c7nyyINmLgkWqYpfynvaOjuqOgs8-a3E7pTy5hhQPfEg$> >> >> <https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.19%2Fbioc-LATEST%2FMSA2dist%2Fnebbiolo1-install.html__%3B!!PxiZbSOawA!JXtUuFyazbia9xcI2poFmD8RwdzAoeA2p7qo-3E8uEECTMUF2RvOae17q7c7nyyINmLgkWqYpfynvaOjuqOgs8-a3E7pTy5hhQPfEg%24&data=05%7C02%7Cjennifer.wokaty%40sph.cuny.edu%7C50043778ddea452e058a08dc647c75f6%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638495732936285487%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=FZZ1d%2BNWcAGQgqYx5d4wkJWE4OjfwocSJTGWGiO%2BBzU%3D&reserved=0 >> > >> >> o ERROR for 'R CMD build' on nebbiolo1. See the details here: >> >> https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.19%2Fbioc-LATEST%2FMSA2dist%2Fnebbiolo1-buildsrc.html__%3B!!PxiZbSOawA!JXtUuFyazbia9xcI2poFmD8RwdzAoeA2p7qo-3E8uEECTMUF2RvOae17q7c7nyyINmLgkWqYpfynvaOjuqOgs8-a3E7pTy6dYC38CA%24&data=05%7C02%7Cjennifer.wokaty%40sph.cuny.edu%7C50043778ddea452e058a08dc647c75f6%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638495732936292827%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=EWzdda0QeS0ADA55wWN7agnv7qfVmg96gQw%2FVQgQMLY%3D&reserved=0<https://urldefense.com/v3/__https://bioconductor.org/checkResults/3.19/bioc-LATEST/MSA2dist/nebbiolo1-buildsrc.html__;!!PxiZbSOawA!JXtUuFyazbia9xcI2poFmD8RwdzAoeA2p7qo-3E8uEECTMUF2RvOae17q7c7nyyINmLgkWqYpfynvaOjuqOgs8-a3E7pTy6dYC38CA$> >> >> <https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.19%2Fbioc-LATEST%2FMSA2dist%2Fnebbiolo1-buildsrc.html__%3B!!PxiZbSOawA!JXtUuFyazbia9xcI2poFmD8RwdzAoeA2p7qo-3E8uEECTMUF2RvOae17q7c7nyyINmLgkWqYpfynvaOjuqOgs8-a3E7pTy6dYC38CA%24&data=05%7C02%7Cjennifer.wokaty%40sph.cuny.edu%7C50043778ddea452e058a08dc647c75f6%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638495732936297677%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=Y%2Fv5gS0o%2Fo%2FnKcEvxye%2F76wPpfdgpwYqrYDZfsLxwl4%3D&reserved=0 >> > >> >> However, if I check the the page, there are no ERROR listed: >> >> Report page was generated: >> >> This page was generated on 2024-04-23 11:37:19 -0400 (Tue, 23 Apr 2024). >> >> Should I just wait or where I can find the mentioned ERROR? >> >> Best regards >> >> Kristian >> > -- > Herv� Pag�s > > Bioconductor Core Team > hpages.on.git...@gmail.com -- Herv� Pag�s Bioconductor Core Team hpages.on.git...@gmail.com [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel__%3B!!PxiZbSOawA!JXtUuFyazbia9xcI2poFmD8RwdzAoeA2p7qo-3E8uEECTMUF2RvOae17q7c7nyyINmLgkWqYpfynvaOjuqOgs8-a3E7pTy4hqUq-RQ%24&data=05%7C02%7Cjennifer.wokaty%40sph.cuny.edu%7C50043778ddea452e058a08dc647c75f6%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638495732936302599%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=K6GGgBGTefnpAWOzPrwu%2FPaVSlUMMCSo9Q9%2FA2Cfvpg%3D&reserved=0<https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!PxiZbSOawA!JXtUuFyazbia9xcI2poFmD8RwdzAoeA2p7qo-3E8uEECTMUF2RvOae17q7c7nyyINmLgkWqYpfynvaOjuqOgs8-a3E7pTy4hqUq-RQ$> [[alternative HTML version deleted]]
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