Hi Martin, could you please also install libz-dev or zlib1g-dev (not sure which one is needed)? - https://bioconductor.org/checkResults/devel/bioc-LATEST/epialleleR/kunpeng2-install.html
Best, Oleksii On Wed, 23 Oct 2024 at 08:33, Martin Grigorov <martin.grigo...@gmail.com> wrote: > Hi, > > The problem was missing rustc and cargo on kunpeng2: > ===================================================== > /bin/sh: line 2: rustc: command not found > Rust version: > /bin/sh: line 3: cargo: command not found > Cargo version: > /bin/sh: line 11: cargo: command not found > make: *** [Makevars:25: > > /home/biocbuild/tmp/RtmpT7Ahcq/R.INSTALL28b5195beb22/clarabel/src/rust/target/release/libclarabel.a] > Error 127 > ERROR: compilation failed for package ‘clarabel’ > * removing ‘/home/biocbuild/R/R-4.4.1/site-library/clarabel’ > ERROR: dependency ‘clarabel’ is not available for package ‘CVXR’ > * removing ‘/home/biocbuild/R/R-4.4.1/site-library/CVXR’ > ===================================================== > > I have installed them and now all is fine: > > biocbuild@kunpeng2 ~/git> R CMD build ANCOMBC > > (base) > * checking for file ‘ANCOMBC/DESCRIPTION’ ... OK > * preparing ‘ANCOMBC’: > * checking DESCRIPTION meta-information ... OK > * installing the package to process help pages > Loading required namespace: ANCOMBC > * saving partial Rd database > * creating vignettes ... OK > * checking for LF line-endings in source and make files and shell scripts > * checking for empty or unneeded directories > * looking to see if a ‘data/datalist’ file should be added > * building ‘ANCOMBC_2.7.1.tar.gz’ > > Regards, > Martin > > > On Tue, Oct 22, 2024 at 9:38 PM Kern, Lori via Bioc-devel < > bioc-devel@r-project.org> wrote: > > > Thank you for reaching out. The ERROR will not affect your package being > > released in 3.20. We will investigate why CVXR is not available on that > > platform. > > > > Cheers, > > > > > > > > Lori Shepherd - Kern > > > > Bioconductor Core Team > > > > Roswell Park Comprehensive Cancer Center > > > > Department of Biostatistics & Bioinformatics > > > > Elm & Carlton Streets > > > > Buffalo, New York 14263 > > > > ________________________________ > > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Huang > > Lin (Frederick) <huanglinfreder...@gmail.com> > > Sent: Tuesday, October 22, 2024 2:28 PM > > To: bioc-devel@r-project.org <bioc-devel@r-project.org> > > Subject: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform > > > > Dear BioC Team, > > > > I recently submitted a change to the devel branch for the ANCOMBC > package: > > > > > https://secure-web.cisco.com/1mLHqucygNoVYQpL98cfWLJcc4ukFxfVEK1vO3vWKlsZT9SSd6975Fe56mS2AulHLyW0Cuo05ZZrklydxCocZm1WmRE8dQUB6TV7cwcpj565q6Cq6pN7X3z1zoP400iBKDsqU9u9OnINotXj3qVYFsvhU-hAkZG8LqbQd3yRS0DBCFAqDmRKp9D0BllxGmc8GSZ4hkKM4UhrThBjBrlVhxflD6cclkThD3mlhzqcjC-e7novu6wIngsUj5nQfrdoFqInH53w_Nuxi7J6t51Q1mvpHpjOJFwk_3v5HCEXu5yE4ww-rjiu19Sg_cMIgYzgSvVzh_R4fBO5grhbyXhQqDA/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.20%2Fbioc-LATEST%2FANCOMBC%2Fnebbiolo2-buildsrc.html > > > > However, it showed an error on the kunpeng2 platform. Upon checking the > raw > > results, it appears that the error is due to the missing dependency > ‘CVXR’ > > package. > > > > Since this package is maintained by others, I wanted to seek your advice > on > > this issue. Will this cause any problems for the release of ANCOMBC on > > Bioconductor 3.20? > > > > Best regards, > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > > > > https://secure-web.cisco.com/1_PXUY54xMcyvZd-axtsGrsQIplTfY0lVue__l7qO7-luvgzGuniKIsiUSSi8IY181DNyD5-2auTbnMRe72kfIfwAMeLoYjHVFTIiYaB_5vn6kfTETYLRCWloTL9Rukze7_khHKVu7XK_I_J5Mq0GyVUuqu9DzwZp7LfxS1QcE4WsViKTdO8lnkNf3kgy04NzRYkfu5fuEggGVuSS2Q75UX8ILLADwFKLtampqpMWlQKt6e26oi_pRD08JSLJ0NcABrSz9tzLW4a5jC-awuByjl71Jj9CjV50wtq0fmSXlxXqYHblouixuLGrw_LXtcyJJhgGH2g9xoceNvTo-6kawg/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > > > > > > This email message may contain legally privileged and/or confidential > > information. If you are not the intended recipient(s), or the employee > or > > agent responsible for the delivery of this message to the intended > > recipient(s), you are hereby notified that any disclosure, copying, > > distribution, or use of this email message is prohibited. If you have > > received this message in error, please notify the sender immediately by > > e-mail and delete this email message from your computer. Thank you. > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
