cargo is installed on the Linux devel builder, but in a different location biocbuild@nebbiolo1:~$ which cargo /usr/bin/cargo biocbuild@nebbiolo1:~$ cargo --version cargo 1.75.0
We generally prefer to apt install dependencies on the Linux builders, which might be why the path is different. It is not currently installed on any of the macs or Windows machines, but I can install it on them next week. Andres Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Sun Wenjie <sunw...@gmail.com> Sent: Monday, March 3, 2025 6:40 PM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] Rust compilation environment in Bioconductor * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * Hello, I recently tried to translate Rcpp to Rust using extendr for my package. However, I encountered a compilation error in Bioc. I'm unsure whether the issue is with my package configuration or if Bioconductor lacks the necessary Rust environment. Could someone provide some suggestions? Here is the Bioc checkResults: https://urldefense.com/v3/__https://www.bioconductor.org/checkResults/3.21/bioc-LATEST/CellBarcode/__;!!LRXxDv2l!VfHUcNvgTi02vTeBmtsZvdw94LBgyKc6BO-A3r-2JNxEbGF_ZeoWSiJQw5yazbNz5A-4MmxNeS6UQDvf0bRoXWNdOA$ The main problem is the absence of `cargo`, as indicated by the error message: `/bin/sh: line 6: cargo: command not found` By the way, the package passed the check on GitHub Actions: https://urldefense.com/v3/__https://github.com/wenjie1991/CellBarcode/actions/runs/13597209989__;!!LRXxDv2l!VfHUcNvgTi02vTeBmtsZvdw94LBgyKc6BO-A3r-2JNxEbGF_ZeoWSiJQw5yazbNz5A-4MmxNeS6UQDvf0bQlsR4RsQ$ Thank you, Wenjie ------------------------------------------ Wenjie SUN Postdoctoral researcher UMR168, Curie Institute E-mail: wenjie....@curie.fr Address: batiment Curie, RDC.13A 11 rue Pierre et Marie Curie, 75005 Paris https://urldefense.com/v3/__https://curie.fr/equipe/perie__;!!LRXxDv2l!VfHUcNvgTi02vTeBmtsZvdw94LBgyKc6BO-A3r-2JNxEbGF_ZeoWSiJQw5yazbNz5A-4MmxNeS6UQDvf0bQ0zMAILw$ <https://urldefense.com/v3/__https://institut-curie.org/personne/wenjie-sun__;!!LRXxDv2l!VfHUcNvgTi02vTeBmtsZvdw94LBgyKc6BO-A3r-2JNxEbGF_ZeoWSiJQw5yazbNz5A-4MmxNeS6UQDvf0bTYT25reA$ > _______________________________________________ Bioc-devel@r-project.org mailing list https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!LRXxDv2l!VfHUcNvgTi02vTeBmtsZvdw94LBgyKc6BO-A3r-2JNxEbGF_ZeoWSiJQw5yazbNz5A-4MmxNeS6UQDvf0bSObEAbow$ [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
