Thank you for your response.  I can assist with deprecation.   Thank you for 
letting us know.

Cheers,


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Nirav Malani <malni...@gmail.com>
Sent: Friday, June 20, 2025 10:31 AM
To: bioc-devel@r-project.org <bioc-devel@r-project.org>; Kern, Lori 
<lori.sheph...@roswellpark.org>
Subject: Re: [Bioc-devel] hiReadsProcessor Bioconductor package

Hi Lori,

Not sure what happened in the last reply.

I was reaching out to discuss possibility to flag this package as “archived” or 
deprecated. I don’t have time to support this package anymore and don’t think 
there are any active users who will benefit from this software given other 
advanced package now available on BioC.

Best,
Nirav Malani
On Jun 20, 2025 at 10:28 AM -0400, Kern, Lori <lori.sheph...@roswellpark.org>, 
wrote:
It looks like this is an empty message?

Based on the title:  It looks like your package has been failing in devel.
https://bioconductor.org/checkResults/devel/bioc-LATEST/hiReadsProcessor/<https://secure-web.cisco.com/1f_ZisNQqAYh-wGlIOEz5TwPPjxHe1P5LvWTeTVkWGxqtyp9J5xLTPp6FKMivmn91z7IPkcFaFeetkWAQi27zbPi2mNP55KbPC99VUHjKei8mYQsmL6iOUwRMnK0pz0kwJioJ0_ihe63Nv2fD9Ei1FKMx233kpXCqdUtlR8dVcNF71Us3GXDq8r7Ej6Wj5KD6CziKchdHK6QMGy5_rkhT4l_HLQxvlMDk-bBkSOhAumerqiRYwlC808keVEtu6lQ8l1J5OTSnRp1PCGx_VIrSfBzcwlwqw7G6zpCpChPqDpsIChC9piJGCUrLoJE0ofcR/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FhiReadsProcessor%2F>

The error message gives instructions on how to resolve the error.

Let us know if you need further assistance



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of 
malni...@gmail.com <malni...@gmail.com>
Sent: Friday, June 20, 2025 10:23 AM
To: bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: Re: [Bioc-devel] hiReadsProcessor Bioconductor package


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