Hello, Just out of pure curiosity. If I have around 60'000'000 short fragmnents. A typical output of an Illumina GAII experiment. Can your package align these to a reference genome, such as the Human genome and if so, how much memory is required to complete this process. How much time is necessary on a typical GAII server ? That is 16 Gb memory and 4 intel quadcores.
Could you compare the speed of your processing against something like for instance Eland ? Wkr, Werner,- -- Dr. Werner Van Belle http://werner.sigtrans.org/ _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
