Hi Herve,

Hervé Pagès wrote:
<snip>
bowtie, MAQ and Eland return at most 1 match
per read.

This isn't true. The default is one, but you can have as many as you want for any of these tools. Of course there is a penalty for more matches.

Best,

Jim


--
James W. MacDonald, M.S.
Biostatistician
Hildebrandt Lab
8220D MSRB III
1150 W. Medical Center Drive
Ann Arbor MI 48109-0646
734-936-8662

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