Assuming that you have counts per gene, you can use any number of heatmap functions. A quick search of the bioconductor archives will turn up many examples/possibilities. If you are asking about how to get counts per gene and do analyses looking for differential expression, then you might want to give a bit more detail of your experiment.
Sean On Tue, Mar 3, 2009 at 6:43 PM, Carl Yeoman <[email protected]> wrote: > Hi, > > I was hoping someone might point me in the direction of the best package > (in R) for generating heatmaps from my solexa analysis of a transcriptome. > Quantitative and statistical analysis were performed using ShortRead. > > Carl > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > >
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