Hi Ivan,
On Apr 22, 2009, at 9:30 PM, [email protected] wrote:
Hello,
Installing BioC packages is very easy. You just do, for instance
source("http://bioconductor.org/biocLite.R";;)
biocLite("ShortRead")
How do you install Rmpi?
I am running Fedora linux and there seems not to exist an Rmpi rpm
package for x86_64.
[Not really related to sequencing, per se, but ... :-)]
Since Rmpi is hosted on CRAN[1], you can install it with similar ease.
Fire up R and:
R> install.packages('Rmpi', type='source')
At that point, you will (probably) be asked to select a cran mirror,
so do so and let it rip.
You can also (probably) exclude the `type='source'`, but it won't
hurt. This should work assuming you have a sane build environment on
your linux box (eg. gcc, make, etc).
HTH,
-steve
[1] CRAN Rmpi url: http://cran.r-project.org/web/packages/Rmpi/index.html
--
Steve Lianoglou
Graduate Student: Physiology, Biophysics and Systems Biology
Weill Medical College of Cornell University
http://cbio.mskcc.org/~lianos
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