Yes, but I want to try other callers... -----Original Message----- From: Cei Abreu-Goodger [mailto:[email protected]] Sent: Wednesday, April 29, 2009 4:25 PM To: João Fadista Cc: [email protected] Subject: Re: [Bioc-sig-seq] call genomic structural variation
I thought MAQ had its own indel caller? João Fadista wrote: > Hi, > > I would like to know if there is any package (maybe ShortRead or Biostrings) > that has some specific functions to call structural variations (CNVs and > indels) in a genome given Solexa reads mapped by MAQ. > > > Thanks in advance, > João > > [[alternative HTML version deleted]] > > > > ---------------------------------------------------------------------- > -- > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
