A quick way to have it would be C-level wrappers to the SAMtools library ( http://samtools.sourceforge.net/ ).
L. Joern Toedling wrote:
Hi everyone, has anybody by chance already written a parser for importing alignments in BAM/SAM format into objects of class AlignedRead? This format seems to be gaining more and more support, yet it is still absent from the options in function readAligned. If one of you already has written such a parsing function and would not mind sharing it, please let me know. Best regards, Joern --- Joern Toedling Institut Curie -- U900 26 rue d'Ulm, 75005 Paris, FRANCE Tel. +33 (0)156246926 _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
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