Laurent Gautier wrote: > > A quick way to have it would be C-level wrappers to the SAMtools library > ( http://samtools.sourceforge.net/ ). >
This is what Rsamtools does. Martin > > L. > > > Joern Toedling wrote: >> Hi everyone, >> >> has anybody by chance already written a parser for importing >> alignments in >> BAM/SAM format into objects of class AlignedRead? This format seems to be >> gaining more and more support, yet it is still absent from the options in >> function readAligned. If one of you already has written such a parsing >> function and would not mind sharing it, please let me know. >> >> Best regards, >> Joern >> >> --- >> Joern Toedling >> Institut Curie -- U900 >> 26 rue d'Ulm, 75005 Paris, FRANCE >> Tel. +33 (0)156246926 >> >> _______________________________________________ >> Bioc-sig-sequencing mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793 _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
