Hi All
I am starting a new thread since the old issues I believe have been
taken care of. I am trying to install dev version of Rsamtools and
following is what I have done till now. -Abhi
1. R devel install
2. BioC devel install ver 2.5.8
..CMD:- Rdev CMD INSTALL --clean Rsamtools/
****Error:*****
Warning in .completeClassSlots(ClassDef, where) :
undefined slot classes in definition of "Alignments0":
gapped_ranges(class "GappedRanges")
Error in setValidity2("Alignments0", .valid.Alignments0, where =
asNamespace("Rsamtools")) :
unused argument(s) (where = asNamespace("Rsamtools"))
Error : unable to load R code in package 'Rsamtools'
ERROR: lazy loading failed for package 'Rsamtools'
* removing
'/local/projects/grc/devel/apratap/softwares/R-devel/R-rc/lib64/R/librar
y/Rsamtools'
========
sessionInfo()
R version 2.10.1 RC (2009-12-06 r50688)
x86_64-unknown-linux-gnu
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
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