Hi,
On 12/8/09 3:29 PM, Pratap, Abhishek wrote:
1. R devel install
It might help to describe what you did to install R devel. It doesn't
seem that you are using R-devel based on your sessionInfo which says:
> sessionInfo()
>
> R version 2.10.1 RC (2009-12-06 r50688)
>
> x86_64-unknown-linux-gnu
You should get something more along the lines of:
R version 2.11.0 Under development (unstable) (--)
..CMD:- Rdev CMD INSTALL --clean Rsamtools/
You will also want to be sure dependencies are already installed when
installing from source in this fashion. Looking at the DESCIPTION file
in Rsamtools/ you might try:
Rdev
source("http://bioconductor.org/biocLite.R";)
biocLite(c("IRanges", "Biostrings", "BSgenome"))
Then repeat what you tried for installing Rsamtools
+ seth
--
Seth Falcon
Program in Computational Biology | Fred Hutchinson Cancer Research Center
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