Hi Michael,
The first thing to try is to install a (much) newer version of R. The
latest release is R 2.10.1.
+ seth
On 12/22/09 2:44 PM, Michael Muratet wrote:
Greetings
I am trying to install Genominator (and GenomeGraphs). I tried the usual:
source("http://bioconductor.org/biocLite.R";)
biocLite("Genominator")
and it returned:
Running biocinstall version 2.3.14 with R version 2.8.0 Your version of
R requires version 2.3 of Bioconductor.
Warning message: package ‘Genominator’ is not available
So I tried downloading the tarball from the website and R CMD INSTALL
Genominator_1.0.2.tar.gz
and got:
{loading and cranking output} then
ERROR: Environment (text enclosed in {}) found in \title{...}.
The title must be plain text! ERROR: building help failed for package
'Genominator' ** Removing
'/Library/Frameworks/R.framework/Resources/library/Genominator'
I think maybe there's an issue with the package, but I'm willing to
accept I fouled up somewhere. Anybody have any suggestions?
sysinfo:
sessionInfo() R version 2.8.0 (2008-10-20) i386-apple-darwin8.11.1
locale: en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached
base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached): [1] tools_2.8.0
Thanks
Mike
Michael Muratet, Ph.D.
Senior Scientist
HudsonAlpha Institute for Biotechnology
[email protected]
(256) 327-0473 (p)
(256) 327-0966 (f)
Room 4005
601 Genome Way
Huntsville, Alabama 35806
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--
Seth Falcon
Program in Computational Biology | Fred Hutchinson Cancer Research Center
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