On Dec 22, 2009, at 4:58 PM, Patrick Aboyoun wrote:
Michael,
Bioconductor packages are coupled with a particular version of R.
Genominator was introduced into Bioconductor in BioC 2.5 to be used
with R 2.10. To use the Genominator package, update your version of
R to 2.10.1 and use the biocLite call you specified below.
Cheers,
Patrick
Thanks guys. It was operator error (old version)
Merry Christmas.
Mike
Michael Muratet wrote:
Greetings
I am trying to install Genominator (and GenomeGraphs). I tried the
usual:
source("http://bioconductor.org/biocLite.R";)
biocLite("Genominator")
and it returned:
Running biocinstall version 2.3.14 with R version 2.8.0 Your
version of R requires version 2.3 of Bioconductor.
Warning message: package ‘Genominator’ is not available
So I tried downloading the tarball from the website and R CMD
INSTALL Genominator_1.0.2.tar.gz
and got:
{loading and cranking output} then
ERROR: Environment (text enclosed in {}) found in \title{...}.
The title must be plain text! ERROR: building help failed for
package 'Genominator' ** Removing '/Library/Frameworks/R.framework/
Resources/library/Genominator'
I think maybe there's an issue with the package, but I'm willing to
accept I fouled up somewhere. Anybody have any suggestions?
sysinfo:
sessionInfo() R version 2.8.0 (2008-10-20) i386-apple-darwin8.11.1
locale: en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils datasets
methods base loaded via a namespace (and not attached): [1]
tools_2.8.0
Thanks
Mike
Michael Muratet, Ph.D.
Senior Scientist
HudsonAlpha Institute for Biotechnology
[email protected]
(256) 327-0473 (p)
(256) 327-0966 (f)
Room 4005
601 Genome Way
Huntsville, Alabama 35806
_______________________________________________
Bioc-sig-sequencing mailing list
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https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
Michael Muratet, Ph.D.
Senior Scientist
HudsonAlpha Institute for Biotechnology
[email protected]
(256) 327-0473 (p)
(256) 327-0966 (f)
Room 4005
601 Genome Way
Huntsville, Alabama 35806
_______________________________________________
Bioc-sig-sequencing mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
