Hi, On Wed, Feb 17, 2010 at 2:07 PM, Droit Arnaud <[email protected]> wrote: > Hi Patrick, > > Thanks for your reply. > I have install the latest Biostrings (2.15.21), rtracklayer (1.7.4), > ShortRead (1.5.15), IRanges (1.5.46), BSgenome (1.15.4) and Biostrings > (2.15.21) packages and I sill received the same error message when I tried to > install Rsamtools. > I have also tried it with the packages directly from the SVN account > (rtracklayer 1.7.9,....) but there is still too many error that appeared. > > If you have any other ideas (platform, version, 64 bit ...), please let me > know?
That's weird ... just this morning I pulled recent versions of IRanges, Biostrings, BSgenome, ShortRead, Rsamtools, and rtracklayer from SVN. They are at revision 44736. I did an `R CMD INSTALL --clean` of all of those packages and they seem to install fine (I haven't really used them today, though). For what it's worth, I do get that ''.__C__file', '.__C__connection'' errors from the GenomicFeatures package. I don't actually use that package, though, and I didn't see it mentioned in your email, but I thought I'd include that so you don't feel like you're going crazy, or something :-) Also, I'm on OS X.6.2 and using R version 2.11.0 Under development (unstable) (2010-02-15 r51142). -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
