Could this be related to the issues regarding pulling from svn vs. using biocLite that I asked about in a different context some weeks ago. The tarball pulled from biocLite is only updated if the version number is bumped.
Kasper On Wed, Feb 17, 2010 at 2:47 PM, Steve Lianoglou <[email protected]> wrote: > Hi, > > On Wed, Feb 17, 2010 at 2:07 PM, Droit Arnaud <[email protected]> wrote: >> Hi Patrick, >> >> Thanks for your reply. >> I have install the latest Biostrings (2.15.21), rtracklayer (1.7.4), >> ShortRead (1.5.15), IRanges (1.5.46), BSgenome (1.15.4) and Biostrings >> (2.15.21) packages and I sill received the same error message when I tried >> to install Rsamtools. >> I have also tried it with the packages directly from the SVN account >> (rtracklayer 1.7.9,....) but there is still too many error that appeared. >> >> If you have any other ideas (platform, version, 64 bit ...), please let me >> know? > > That's weird ... just this morning I pulled recent versions of > IRanges, Biostrings, BSgenome, ShortRead, Rsamtools, and rtracklayer > from SVN. They are at revision 44736. > > I did an `R CMD INSTALL --clean` of all of those packages and they > seem to install fine (I haven't really used them today, though). > > For what it's worth, I do get that ''.__C__file', '.__C__connection'' > errors from the GenomicFeatures package. I don't actually use that > package, though, and I didn't see it mentioned in your email, but I > thought I'd include that so you don't feel like you're going crazy, or > something :-) > > Also, I'm on OS X.6.2 and using R version 2.11.0 Under development > (unstable) (2010-02-15 r51142). > > -steve > > -- > Steve Lianoglou > Graduate Student: Computational Systems Biology > | Memorial Sloan-Kettering Cancer Center > | Weill Medical College of Cornell University > Contact Info: http://cbio.mskcc.org/~lianos/contact > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
