Hi, I'm referencing the info that's mentioned in section 2.2.4 of the SAM specification: http://samtools.sourceforge.net/SAM1.pdf
Is it possible to get the information stored in there from my BAM file using Rsamtools? I can't find any way to do so, sorry if I'm missing something obvious. Bowtie (and I reckon BWA, or whatever) stores the mismatch info of the read-to-reference (eg. MD:Z:5C5C25) from there, and I'd like to be able to get at it Thanks, -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
