MapProfileShort is just a toy like example, it's actually a small part of a real mappability profile. We had to make it smaller for the package, so what you are reporting is probably normal. We are in the process of generating mappability profiles for a bunch of genomes, everything will be posted on our wiki (wiki.rglab.org<http://wiki.rglab.org>).
On 2010-05-20, at 10:32 PM, Tim Lu wrote: Dear Raphael Gottardo, I happened to come across your recent manuscript “PICS – Probabilistic Inference for ChIPseq” and downloaded the R package and data accompanying the paper. Looking at the data in the MapProfileShort file, I noticed that the regions for chr13, chr14, chr15, chr21 and chr22 were identical. I am not sure if this is deliberate or not, I suspect that there may be an error in this file. I thought I would alert you to this potential problem before your paper comes out in Biometrics (congratulations by the way). Best wishes, Tim Lu THIS EMAIL MESSAGE IS FOR THE SOLE USE OF THE INTENDED RECIPIENT(S) AND MAY CONTAIN CONFIDENTIAL INFORMATION. ANY UNAUTHORIZED REVIEW, USE, DISCLOSURE OR DISTRIBUTION IS PROHIBITED. IF YOU ARE NOT THE INTENDED RECIPIENT, PLEASE CONTACT THE SENDER BY REPLY EMAIL AND DESTROY ALL COPIES OF THE ORIGINAL MESSAGE. _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
