Woops, small type in my example: ## assigning `<-` into a DNAString in *this* context will fail R> subseq(x[1], 2, 3) <- NULL Error in `[[<-`(`*tmp*`, 1, value = <S4 object of class "DNAString">) : no method for assigning subsets of this S4 class
Should have been: R> subseq(x[[1]], 2, 3) <- NULL Not sure how that slipped through like that, sorry. Btw: sessionInfo() R version 2.11.0 Patched (2010-05-05 r51909) x86_64-apple-darwin9.8.0 locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] Biostrings_2.16.0 IRanges_1.7.1 loaded via a namespace (and not attached): [1] Biobase_2.8.0 -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
