Thanks so much for clarifying this behavior and how this subseq() operation will work when you use x[1] instead of x[[1]]. I was at a loss for why it was behaving this way until you pointed this out!
Andrew On Wed, May 26, 2010 at 2:35 PM, Steve Lianoglou < [email protected]> wrote: > Woops, small type in my example: > > ## assigning `<-` into a DNAString in *this* context will fail > R> subseq(x[1], 2, 3) <- NULL > Error in `[[<-`(`*tmp*`, 1, value = <S4 object of class "DNAString">) : > no method for assigning subsets of this S4 class > > Should have been: > R> subseq(x[[1]], 2, 3) <- NULL > > Not sure how that slipped through like that, sorry. > > Btw: > > sessionInfo() > R version 2.11.0 Patched (2010-05-05 r51909) > x86_64-apple-darwin9.8.0 > > locale: > [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices datasets utils methods base > > other attached packages: > [1] Biostrings_2.16.0 IRanges_1.7.1 > > loaded via a namespace (and not attached): > [1] Biobase_2.8.0 > > -- > Steve Lianoglou > Graduate Student: Computational Systems Biology > | Memorial Sloan-Kettering Cancer Center > | Weill Medical College of Cornell University > Contact Info: http://cbio.mskcc.org/~lianos/contact > [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
