[Bioc-sig-seq] Problem installing latest version (1.0.2) RSamtools from Bioconductor

[kanika arora]

Hi ALL,

* *

I am trying to install l.0.2 version Rsamtools from Bioconductor and facing
problems. Please find the error message mentioned below:





** help

*** installing help indices

  converting help for package âRsamtoolsâ

    finding HTML links ... done

    BamViews-class                          html

    finding level-2 HTML links ... done



    Rsamtools-package                       html

    ScanBamParam-class                      html

    readBamGappedAlignments                 html

Rd warning: ./man/readBamGappedAlignments.Rd:10: missing file link
âGappedAlignmentsâ

Rd warning: ./man/readBamGappedAlignments.Rd:36: missing file link
âGappedAlignmentsâ

    readPileup                              html

Rd warning: ./man/readPileup.Rd:34: missing file link âGRangesâ

    scanBam                                 html

** building package indices ...

** testing if installed package can be loaded

Error in dyn.load(file, DLLpath = DLLpath, ...) :

  unable to load shared library
'/usr/lib64/R/library/Rsamtools/libs/Rsamtools.so':

  /usr/lib64/R/library/Rsamtools/libs/Rsamtools.so: undefined symbol:
gzopen64

ERROR: loading failed

* removing â/usr/lib64/R/library/Rsamtoolsâ





> sessionInfo()

R version 2.11.0 (2010-04-22)

x86_64-redhat-linux-gnu



locale:

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C

 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8

 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8

 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C

 [9] LC_ADDRESS=C               LC_TELEPHONE=C

[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C



attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods   base



other attached packages:

[1] goseq_1.0.1            geneLenDataBase_0.99.4 BiasedUrn_1.03



loaded via a namespace (and not attached):

 [1] AnnotationDbi_1.10.1 Biobase_2.8.0        Biostrings_2.16.2

 [4] BSgenome_1.16.1      DBI_0.2-5            GenomicRanges_1.0.1

 [7] grid_2.11.0          IRanges_1.6.4        lattice_0.18-5

[10] Matrix_0.999375-38   mgcv_1.6-1           nlme_3.1-96

[13] RCurl_1.4-2          RSQLite_0.9-1        rtracklayer_1.8.1

[16] tools_2.11.0         XML_3.1-0





I already installed all the dependencies of the package. Please guide me in
this context.

Thanks in advance,

Kanika

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