Hello, I tried out an example in the documentation without success.
> gd <- GenomeData(list(chr1 = IRanges(1, 10), chrX = IRanges(2, 5)), + organism = "Mmusculus", provider = "UCSC", + providerVersion = "mm9") > gdl <- GenomeDataList(list(gd)) > as(gdl, "data.frame") NULL > > sessionInfo() R version 2.12.0 (2010-10-15) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_AU.UTF-8 [7] LC_PAPER=en_AU.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] grid stats graphics grDevices utils datasets methods [8] base other attached packages: [1] BSgenome_1.18.3 Rsamtools_1.2.3 Biostrings_2.18.2 [4] gplots_2.8.0 caTools_1.11 bitops_1.0-4.1 [7] gdata_2.8.1 gtools_2.6.2 GenomicRanges_1.2.3 [10] IRanges_1.8.9 loaded via a namespace (and not attached): [1] Biobase_2.10.0 tools_2.12.0 > gd <- GenomeData(list(chr1 = IRanges(1, 10), chrX = IRanges(2, 5)), + organism = "Mmusculus", provider = "UCSC", + providerVersion = "mm9") > gdl <- GenomeDataList(list(gd)) > as(gdl, "data.frame") NULL -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
