On Sun, Feb 27, 2011 at 10:00 PM, Dario Strbenac <[email protected]>wrote:
> Hello, > > I tried out an example in the documentation without success. > > > gd <- GenomeData(list(chr1 = IRanges(1, 10), chrX = IRanges(2, 5)), > + organism = "Mmusculus", provider = "UCSC", > + providerVersion = "mm9") > > gdl <- GenomeDataList(list(gd)) > > as(gdl, "data.frame") > NULL > > > Thanks. Fixed in 1.19.4. Code assumed that the GenomeDataList would always have names. > > sessionInfo() > R version 2.12.0 (2010-10-15) > Platform: x86_64-unknown-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8 > [5] LC_MONETARY=C LC_MESSAGES=en_AU.UTF-8 > [7] LC_PAPER=en_AU.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] grid stats graphics grDevices utils datasets methods > [8] base > > other attached packages: > [1] BSgenome_1.18.3 Rsamtools_1.2.3 Biostrings_2.18.2 > [4] gplots_2.8.0 caTools_1.11 bitops_1.0-4.1 > [7] gdata_2.8.1 gtools_2.6.2 GenomicRanges_1.2.3 > [10] IRanges_1.8.9 > > loaded via a namespace (and not attached): > [1] Biobase_2.10.0 tools_2.12.0 > > gd <- GenomeData(list(chr1 = IRanges(1, 10), chrX = IRanges(2, 5)), > + organism = "Mmusculus", provider = "UCSC", > + providerVersion = "mm9") > > gdl <- GenomeDataList(list(gd)) > > as(gdl, "data.frame") > NULL > > -------------------------------------- > Dario Strbenac > Research Assistant > Cancer Epigenetics > Garvan Institute of Medical Research > Darlinghurst NSW 2010 > Australia > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
