hiiii
 ya there r mathematical formulas tht r behind the scoring,they r achieved
through corelation and regression methods and after tht determinants and
matrices are involved

On Thu, Dec 3, 2009 at 8:52 PM, jyoti gupta <[email protected]> wrote:

> hiii,
>
> satya swarup as per last mail discussion i m sending you some attached
> files by these files you can find the details used in sequence alignment.
>
> feel free to ask any further query.
>
> thanks
>
> On Tue, Nov 10, 2009 at 1:52 AM, Satya Swarup Samal <[email protected]
> > wrote:
>
>> Dear all,
>>
>> In sequence alignment algorithms e.g. Smith waterman or Needleman wunch,
>> we have match, mismatch and gap score while comparing two sequences. But how
>> we calculate these scores ? Is there any mathematical way or its just based
>> on trial and error ?
>>
>> Thanx in advance
>>
>> --
>> Best Regards
>> Satya S. Samal
>>
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>
> Jyoti Rusia Gupta
>
>
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