Hey Ketil, The source is up on patch-tag, but I've put off packaging it and posting to hackage until it's a bit more complete.
https://patch-tag.com/r/dfornika/polyphred-xml/home - Implement a data structure to hold results of the polyphred record - ~60% complete (need to add a couple of 'optional' records). - Want to add output to csv, plink and GVF formats. Planning on using the bio GFF code to output GVF (a GFF extension). 0% complete - Want to incorporate tag data from consed .ace files. The 'itch' that I'm trying to scratch is this: I have automated polyphred calls, and manual 'polymorphismConfirmed' tags added through consed. I want to incorporate the manual tags in my SNP calling and reporting procedure, and output to a standard format (GVF). Dan On 03/21/2011 03:19 AM, Ketil Malde wrote: > Dan Fornika <dforn...@gmail.com> writes: > >> As my first open-source bioinformatics contribution, I'd like to develop >> an XML parser for the XML output of the 'polyphred' SNP-detection software. > > Great to see more bioinformatics in Haskell! Please use the wiki to add > links and whatever else you need. > > I notice you use the future tense - what is the current status of the > project? > > -k _______________________________________________ Biohaskell mailing list Biohaskell@biohaskell.org http://malde.org/cgi-bin/mailman/listinfo/biohaskell
