Ketil,
Maybe you misunderstood my question. Where is the new biocore used??
Example please.
Vasili
On Sat, Mar 29, 2014 at 4:31 AM, Ketil Malde <ke...@malde.org> wrote:
>
> Vasili I. Galchin <vigalc...@gmail.com> writes:
>
> > I was under the impression that biocore replaces former
> functionality
> > like Bio.Sequence; however, just by random reading in
> > http://hackage.haskell.org/package/bio-0.5.3/src/ .. I don't an import
> of
> > Bio.Core. Why?? I am trying to get TwoBit.hs in compliance with module
> > Bio.Core.
>
> The idea is that biocore contains common definitions, but little
> specific implementation. Which comes as separate libraries, so biofasta,
> biofastq, etc are implementations for those formats.
>
> This way, TwoBit could have its own internal representation (possibly a
> two-bit array), accessible through the "core" typeclasses.
>
> I started to work on making biolib (which is a monolithic library
> containing all kinds of functionality) depend on biocore, but stumbled
> upon some difficulties, and forgot about it.
>
> -k
> --
> If I haven't seen further, it is by standing in the footprints of giants
>
