Here are the biocore reverse dependencies: http://packdeps.haskellers.com/reverse/biocore
* Vasili I. Galchin <vigalc...@gmail.com> [29.03.2014 11:07]: > Ketil, > > Maybe you misunderstood my question. Where is the new biocore used?? > Example please. > > Vasili > > On Sat, Mar 29, 2014 at 4:31 AM, Ketil Malde <ke...@malde.org> wrote: > > Vasili I. Galchin <vigalc...@gmail.com> writes: > > > I was under the impression that biocore replaces former > functionality > > like Bio.Sequence; however, just by random reading in > > http://hackage.haskell.org/package/bio-0.5.3/src/ .. I don't an import > of > > Bio.Core. Why?? I am trying to get TwoBit.hs in compliance with module > > Bio.Core. > > The idea is that biocore contains common definitions, but little > specific implementation. Which comes as separate libraries, so biofasta, > biofastq, etc are implementations for those formats. > > This way, TwoBit could have its own internal representation (possibly a > two-bit array), accessible through the "core" typeclasses. > > I started to work on making biolib (which is a monolithic library > containing all kinds of functionality) depend on biocore, but stumbled > upon some difficulties, and forgot about it. > -k > -- > If I haven't seen further, it is by standing in the footprints of giants
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