You were faster than me this time :) So Ketil found my post about what I did last week: http://biohaskell.org/GSoC_blog/Weeks_1and2 and this is the plan for the next week: http://biohaskell.org/GSoC_blog/Weeks_3and4 .
I don't know a solution yet, but the plan for this week is to understand the code in a way such that I can find a solution. Sarah > >> Here is the post: http://biohaskell.org/GSoC_blog/Weeks_1and2 > > Nice graphs! > > It is pretty clear that, although reading the alignments take up more > space than they should (this is from XML, no?), the big problem is the > the pink (in the first graph) sawtooth graph from > trans_align/collect..., increasing the amount of 'A' data (brown in the > second graph). > > This makes sense, and I think it shows that we've got the problem > figured out. Now all we need is a solution. > > I've reworked the comments a bit, if you pull from the repo > (malde.org/~ketil/public_html/biohaskell/transalign), it is perhaps > easier to work out what's going on. Or so I hope... > > Don't hesitate to ask if anything is unclear! > > -k > -- > If I haven't seen further, it is by standing in the footprints of giants >
