"Vasili I. Galchin" <vigalc...@gmail.com> writes: > 1) I am thinking that the TwoBit.hs library is not compliant with > the biocore library, yes?
I think this is correct - been a while since I looked, but AFAICT, this is only part of the old, monolithic 'bio' library. > 2) Assuming 1) is true, I did a "darcs get/install" but I didn't see > "import bio.core" in Fasta, FastR, etc. ... I want to read old/new code in > order to convert TwoBit.hs to use the new biocore library ... ??? Help ... Perhaps you can look at 'biosff' and compare it to the corresponding files in 'bio'? The SFF format is (like Twobit) a binary format that represent sequence data (and the appropriate data structures should have instances from 'core). -k -- If I haven't seen further, it is by standing in the footprints of giants
