I send you the message over Hangouts: the simplest way to find all Bio
packages is to look at namespace and keywords in entire Hackage database,
and then find Git repo link in the .cabal.
You may copy-paste use of Cabal API for this like this on thank-you-stars
package.
This way you can automate the whole process, and automatically add new
packages in the Bio namespace when they appear.
--
Cheers
Michal
On Tue, Oct 30, 2018 at 7:02 PM Vasili I. Galchin <vigalc...@gmail.com>
wrote:
> The Bio namespace restriction shouldn't affect a global checkout unless
> you are suggesting that a checkout/clone tool enforce this stricture, yes?
>
> On Tue, Oct 30, 2018 at 12:08 PM Michal J Gajda <mga...@mimuw.edu.pl>
> wrote:
>
>> Note that newer BioHaskell packages should use `Bio` namespace.
>>
>> On Tue, Oct 30, 2018 at 6:06 PM Vasili I. Galchin <vigalc...@gmail.com>
>> wrote:
>>
>>> OK. But it is a tree so can be walked ....let me think. (E.g. When
>>> doing a Linux kernel,build there has to be tree walking...).
>>>
>>> On Tue, Oct 30, 2018 at 11:19 AM Ketil Malde <ke...@malde.org> wrote:
>>>
>>>>
>>>> No, I don't think there's a "get everything" script, you need to get
>>>> things separately. (IIRC)
>>>>
>>>> -k
>>>>
>>>> On 2018-10-29 21:50 (-0500), "Vasili I. Galchin" <vigalc...@gmail.com>
>>>> wrote:
>>>>
>>>> > Or more clearly I want to check out all the bioinformatics
>>>> source(git) and
>>>> > do a build on my laptop ....
>>>> >
>>>> > I can't see any script to do a global checkout of the source.
>>>> >
>>>> > On Mon, Oct 29, 2018 at 6:09 PM Vasili I. Galchin <
>>>> vigalc...@gmail.com>
>>>> > wrote:
>>>> >
>>>> >> Hello,
>>>> >>
>>>> >> I want to install all the biohaskell libraries (and maybe some
>>>> >> applications) on my Ubuntu machine. how? I am now here
>>>> >> http://biohaskell.org/Libraries ...
>>>> >>
>>>> >> Vasily
>>>> >>
>>>>
>>>> --
>>>> If I haven't seen further, it is by standing in the footprints of giants
>>>>
>>> _______________________________________________
>>
>>
>>> Biohaskell mailing list
>>> Biohaskell@biohaskell.org
>>> http://biohaskell.org/cgi-bin/mailman/listinfo/biohaskell
>>
>> _______________________________________________
> Biohaskell mailing list
> Biohaskell@biohaskell.org
> http://biohaskell.org/cgi-bin/mailman/listinfo/biohaskell
_______________________________________________
Biohaskell mailing list
Biohaskell@biohaskell.org
http://biohaskell.org/cgi-bin/mailman/listinfo/biohaskell
