Perhaps this information - either the list, or how to obtain it - could be added to the biohaskell wiki? Anyone?
-k On 2018-10-30 19:26 (+0100), Michal J Gajda <mga...@mimuw.edu.pl> wrote: > I send you the message over Hangouts: the simplest way to find all Bio > packages is to look at namespace and keywords in entire Hackage database, > and then find Git repo link in the .cabal. > > You may copy-paste use of Cabal API for this like this on thank-you-stars > package. > > This way you can automate the whole process, and automatically add new > packages in the Bio namespace when they appear. > -- > Cheers > Michal > > On Tue, Oct 30, 2018 at 7:02 PM Vasili I. Galchin <vigalc...@gmail.com> > wrote: > >> The Bio namespace restriction shouldn't affect a global checkout unless >> you are suggesting that a checkout/clone tool enforce this stricture, yes? >> >> On Tue, Oct 30, 2018 at 12:08 PM Michal J Gajda <mga...@mimuw.edu.pl> >> wrote: >> >>> Note that newer BioHaskell packages should use `Bio` namespace. >>> >>> On Tue, Oct 30, 2018 at 6:06 PM Vasili I. Galchin <vigalc...@gmail.com> >>> wrote: >>> >>>> OK. But it is a tree so can be walked ....let me think. (E.g. When >>>> doing a Linux kernel,build there has to be tree walking...). >>>> >>>> On Tue, Oct 30, 2018 at 11:19 AM Ketil Malde <ke...@malde.org> wrote: >>>> >>>>> >>>>> No, I don't think there's a "get everything" script, you need to get >>>>> things separately. (IIRC) >>>>> >>>>> -k >>>>> >>>>> On 2018-10-29 21:50 (-0500), "Vasili I. Galchin" <vigalc...@gmail.com> >>>>> wrote: >>>>> >>>>> > Or more clearly I want to check out all the bioinformatics >>>>> source(git) and >>>>> > do a build on my laptop .... >>>>> > >>>>> > I can't see any script to do a global checkout of the source. >>>>> > >>>>> > On Mon, Oct 29, 2018 at 6:09 PM Vasili I. Galchin < >>>>> vigalc...@gmail.com> >>>>> > wrote: >>>>> > >>>>> >> Hello, >>>>> >> >>>>> >> I want to install all the biohaskell libraries (and maybe some >>>>> >> applications) on my Ubuntu machine. how? I am now here >>>>> >> http://biohaskell.org/Libraries ... >>>>> >> >>>>> >> Vasily >>>>> >> >>>>> >>>>> -- >>>>> If I haven't seen further, it is by standing in the footprints of giants >>>>> >>>> _______________________________________________ >>> >>> >>>> Biohaskell mailing list >>>> Biohaskell@biohaskell.org >>>> http://biohaskell.org/cgi-bin/mailman/listinfo/biohaskell >>> >>> _______________________________________________ >> Biohaskell mailing list >> Biohaskell@biohaskell.org >> http://biohaskell.org/cgi-bin/mailman/listinfo/biohaskell > _______________________________________________ > Biohaskell mailing list > Biohaskell@biohaskell.org > http://biohaskell.org/cgi-bin/mailman/listinfo/biohaskell -- If I haven't seen further, it is by standing in the footprints of giants _______________________________________________ Biohaskell mailing list Biohaskell@biohaskell.org http://biohaskell.org/cgi-bin/mailman/listinfo/biohaskell
