Sorry,
Should have sent this to the whole group
Mark
-----Original Message-----
From: Schreiber, Mark
Sent: Friday, March 02, 2001 9:58 AM
To: 'Matthew Pocock'
Subject: RE: [Biojava-l] orderNSymbols and Alphabets
Hi,
Attached is a program which details some of my adventures in orderNSymbol
land which may be of use as a demo/ tutorial.
Thanks to those who showed me how to do it.
Mark
> -----Original Message-----
> From: Matthew Pocock [mailto:[EMAIL PROTECTED]]
> Sent: Tuesday, February 27, 2001 11:55 PM
> To: Thomas Down
> Cc: Schreiber, Mark; '[EMAIL PROTECTED]'
> Subject: Re: [Biojava-l] orderNSymbols and Alphabets
>
>
> ...and to make the n'th order symbol list for the distribution to be
> used with you can use one of:
>
> SymbolListViews.orderNSybolList(source, order)
> SymbolListViews.windowedSymbolList(source, windowWidth)
>
> Thomas Down wrote:
>
> > On Tue, Feb 27, 2001 at 05:04:59PM +1300, Schreiber, Mark wrote:
> >
> >> Hi
> >>
> >> What is the simplest way to create an orderN alphabet or
> symbol that can be
> >> used in a dsitribution?
> >
> >
> > Cross product alphabets are created via the AlphabetManager:
> >
> > Alphabet codons = AlphabetManager.getCrossProductAlphabet(
> > Collections.nCopies(3,
> DNATools.getDNA());
> >
> > This method will work on any arbitrary List of Alphabets.
> >
> > You can then retrieve symbols from that alphabet:
> >
> > List symbols = DNATools.createDNA("atg").toList();
> > Symbol startCodon = codons.getSymbol(symbols);
> >
> > This method works on an arbitrary list of Symbols (but obviously
> > these must match the alphabet -- you'll get an
> IllegalSymbolException
> > otherwise.
> >
> > Hope this helps,
> >
> > Thomas.
> >
> > _______________________________________________
> > Biojava-l mailing list - [EMAIL PROTECTED]
> > http://biojava.org/mailman/listinfo/biojava-l
>
>
> _______________________________________________
> Biojava-l mailing list - [EMAIL PROTECTED]
> http://biojava.org/mailman/listinfo/biojava-l
>
CrossProductTest.java
