On Mon, Apr 02, 2001 at 02:38:44PM +1200, Schreiber, Mark wrote:
> If I make the following change to FastaFormat the problem is removed but I
> am concerned about if this was the true cause of the problem:
>
> for(int pos = 1; pos <= seq.length(); pos += lineWidth) {
> int end = Math.min(pos + lineWidth - 1, seq.length());
> os.println(seq.subStr(pos, end));
> }
> }
>
> Originally the for statement read:
>
>
> for(int pos = 1; pos <= seq.length() +1; pos += lineWidth) {
> int end = Math.min(pos + lineWidth - 1, seq.length());
> os.println(seq.subStr(pos, end));
> }
>
> The +1 after pos <= seq.length() seems to be incorrect given the <=
> evaluation.
Sequence-dumping bites again :(.
Yes, I think your patch is right.
Do you have CVS write access? If you, you might like to get
onto Matthew and ask him to create an account.
Thomas.
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