I've got Artemis to accept data from the Ensembl DAS reference server and the whole thing has lurched into life like some sort of nameless undead abomination from an H. P. Lovecraft novel. As there are some holes in the DAS feature implementations (e.g. can't make templates, null pointer exceptions when I use them as hash keys etc.) I'll wait until the code stabilises a bit. One this I've noticed is that the sub features (e.g. transcripts) seem to be arriving on a different coordinate system. The coodinates appearing in Artemis are the same as described for the transcript on the Ensembl web site. I can't find documantation on the various coordinate systems on the Ensembl site. Are the transcript coordinates contig-centric? I can't find the relationship between FPC contigs / static_golden_path contigs and the chromosome, which is one way I could shift the coodinates back (because I have asked Artemis to show a subsection based on chromosome coordinates). thanks, -- -= Keith James - [EMAIL PROTECTED] - http://www.sanger.ac.uk/Users/kdj =- The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambs CB10 1SA _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
