Hi - I am thinking of ways to program with sequences that have been read from a sequencer and contain quality information such as phred scores. I can think of a number of ways to do this but the best one i can come up with is to have a interface called Quality or Qualitative or something which has a method like getQuality(). This could then be implemented by any object wanting to store quality information. Such as a sequence or a prediction or a Symbol in the case of a Phred score. Or perhaps even quality of match to a database search. Has anyone thought about this before?? Mark Mark Schreiber Bioinformatics AgResearch Invermay PO Box 50034 Mosgiel New Zealand PH: +64 3 489 9175 _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
