[Biojava-l] Regexp matching performance

[Sharon L. Cousins]

Hello!

Was wondering if any of you could comment on the performance of the Gnu or Oro 
(or any other) Regexp packages for Java. 

I have rewritten our Python implementation of sequence record parsers and 
filters (for both Genbank and EMBL format ) in Java and have narrowed down poor 
performance problems to regular expression matching.

Thanks,

Sharon

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