I have uploaded a version of a work-in-progress version of a parser for GAME-XML version 1.001 to:- http://www.huen.org.uk/david/game-all.tgz It includes the previously mentioned patches for XXXElementHandlerBase which are necessary for handling Gadlfy files as well as a small demo program (dumps Feature.Templates with a dummy SeqIOListener) and a test file from Gadfly (at which it is targetted anyway). The manifest is:- demos/game/ demos/game/AE002734.game demos/game/README.txt demos/game/SeqIOTatler.java demos/game/TestGAME.java src/org/biojava/bio/program/game/ src/org/biojava/bio/program/game/StAXFeatureHandler.java src/org/biojava/bio/program/game/ElementRecognizer.java src/org/biojava/bio/program/game/GAMEHandler.java src/org/biojava/bio/program/game/StAXHandlerFactory.java src/org/biojava/bio/program/game/GAMENamePropHandler.java src/org/biojava/bio/program/game/GAMEGenePropHandler.java src/org/biojava/bio/program/game/GAMETypePropHandler.java src/org/biojava/bio/program/game/StAXPropertyHandler.java src/org/biojava/bio/program/game/GAMESeqPropHandler.java src/org/biojava/bio/program/game/GAMESeqRelPropHandler.java src/org/biojava/bio/program/game/GAMEMapPosPropHandler.java src/org/biojava/bio/program/game/package.html src/org/biojava/bio/program/game/GAMESpanPropHandler.java src/org/biojava/bio/program/game/package.inf src/org/biojava/bio/program/game/GAMEAspectPropHandler.java src/org/biojava/bio/program/game/GAMEAnnotationHandler.java src/org/biojava/bio/program/game/GAMEStartEndCallbackItf.java src/org/biojava/bio/program/game/GAMEStartEndPropHandler.java src/org/biojava/bio/program/game/StAXAdditions.note src/org/biojava/bio/program/game/GAMEFeatureSetPropHandler.java src/org/biojava/bio/program/game/GAMEFeatureSpanHandler.java src/org/biojava/bio/program/game/GAMETranscriptCallbackItf.java src/org/biojava/bio/program/game/GAMENameCallbackItf.java src/org/biojava/bio/program/game/GAMEFeatureSetHandler.java src/org/biojava/bio/program/game/GAMEFeatureCallbackItf.java src/org/biojava/bio/program/game/GAMEDescriptionPropHandler.java src/org/biojava/utils/stax/IntElementHandlerBase.java src/org/biojava/utils/stax/FloatElementHandlerBase.java src/org/biojava/utils/stax/LongElementHandlerBase.java src/org/biojava/utils/stax/DoubleElementHandlerBase.java To use, cd to biojava-live and execute tar xzvf game-all.tgz to update your tree. cd to demos/game to run test demo as per instructions there. The code may be subject to a fair bit more revision. Use at your own risk. A number of assumptions were made as to how elements in GAME should map to features in Biojava which may not suit your taste. It'll suit mine more and more! ;-) Could a CVS commit be done by one who can please after appropriate inspection? Regards, David Huen, Dept. of Genetics, Univ of Genetics, U.K. _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
