Hi - I have been thinking further about the Circular classes from biojava and I have decided that CircularSequence is almost deprecated in favour of CircularView with one minor reservation. There doesn't seem to be a way to serialize view objects even though the underlying object may be. Any ideas? This will have the advantage of simplifying the casting of Circular Objects from say a SequenceDB. I also like the idea of having a CircularLocation as a decorator although I would like to propose that it have a second constructor that creates its own RangeLocation to wrap. This is because (for simplicity) a CircularLocation should be allowed to have a max less than a min. This can be done by making the max longer than the length of the sequence when making a RangeLocation but it would be nice to hid the nescessary conversion. Any thoughts or objections? Mark Mark Schreiber Bioinformatics AgResearch Invermay PO Box 50034 Mosgiel New Zealand PH: +64 3 489 9175 ======================================================================== Attention: The information contained in this message and or attachments is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient is prohibited. If you have received this message in error, please notify the sender immediately. _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
