Thomas Down wrote:
> No, I don't think any of our current SeqIO code will handle
> this format. Certainly, I'm amazed that the EmblLikeFormat
> got as far as it did -- STOCKHOLM format really isn't much
> like EMBL at all (even in the headers, there's the
> extra #=<tag> stuff, to be confusing).
>
> I don't know much about the HMMer alignment parser, but
> a quick look suggests that it's designed to parse a rather
> different format. Simon?
You're right, the BlastLikeSAXParser parser deals with the output from hmmer
programs.
Simon
--
Simon M. Brocklehurst, Ph.D.
Head of Bioinformatics & Advanced IS
Cambridge Antibody Technology
The Science Park, Melbourn, Cambridgeshire, UK
http://www.CambridgeAntibody.com/
mailto:[EMAIL PROTECTED]
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