We'd like to add IO support for the AGAVE XML format
(http://www.agavexml.org) into the BioJava library. Creating the output
code in a SequenceFormat seems straightforward, but I'm confused about
input. AGAVE and BioJava have hierarchies of features and hierarchies of
sequences to represent assembly, but the SeqIOListener doesn't have
interfaces for sub-features and sub-sequences. Do I ignore this for now or
is there a way to do it?
Regards,
Brian
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