Hi, So is there a fix that needs to be put into Biojava then? Is there a bug in BlastSAXParser? We should fix that if we have to.
-Mat -----Original Message----- From: richard cai [mailto:[EMAIL PROTECTED]] Sent: Thursday, October 18, 2001 4:12 PM To: [EMAIL PROTECTED] Subject: Re: [Biojava-l] parse blast results Thanks, Howard. This is exactly what I need. Richard Cai --- Howard Ungar <[EMAIL PROTECTED]> wrote: > By "QueryId" do you mean the line in the Blast > report that starts with > "Query="? If so, then I have done exactly what you > are trying to do. > > Unfortunately, I had to modify one of the biojava > source files > (BlastSAXParser.java), so you will need my changes. > Let me know and I > will forward the source and examples to you. > > If this change sounds useful to others, then it may > make sense to > update this file in the CVS archive. Let me know > and I will email it > along. > > Howard > --- richard cai <[EMAIL PROTECTED]> wrote: > > Dear Fellow BioJava-ers, > > > > I was trying to parse a ncbi-blast results file, > > basically using Simon Brocklehurst's demo program > and > > I couldn't retrieve QueryId. It seems that the > > attribute list doesn't contain the attribute > > "QueryId". > > Could someone with previous experience give me > some > > hint and help? > > > > Thanks. > > > > Richard Cai > > > > __________________________________________________ > > Do You Yahoo!? > > Make a great connection at Yahoo! Personals. > > http://personals.yahoo.com > > _______________________________________________ > > Biojava-l mailing list - [EMAIL PROTECTED] > > http://biojava.org/mailman/listinfo/biojava-l > > > __________________________________________________ > Do You Yahoo!? > Make a great connection at Yahoo! Personals. > http://personals.yahoo.com __________________________________________________ Do You Yahoo!? Make a great connection at Yahoo! Personals. http://personals.yahoo.com _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
