On Mon, Oct 22, 2001 at 10:52:41AM -0400, Cox, Greg wrote:
> Working with ambiguous nucleotides, I've had to add a method to
> SimpleTranslationTable;
>
> public void setTranslation(Symbol from, Symbol to)
> throws IllegalSymbolException
>
> This supplements setTranslation(AtomicSymbol, AtomicSymbol). Will this
> cause problems for anyone if I commit it?
Sorry if I'm being dense here, but are there actually any
cases we're interested in where:
trans([x y]) != [trans(x) trans(y)]
(where "trans" is the operator represented by some translation
table and [] represents an ambiguity set).
If so, then go for it. But in general, I think it's good
to keep ambiguity handling as automagic as possible, otherwise
it's liable to come back and bother us at regular intervals.
Anyone else?
Thomas.
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