Hi,
I get the XML-code wich parser makes and noticed that the parser leaves
the RawOutput-part from the Header-part out when no hits found. When hits
found the XML-code looks like this:
----------------------
<biojava:Header>
<biojava:RawOutput xml:space="preserve">Reference: Altschul, Stephen
F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang,
Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a
new genera..........
----------------------
And when no hits found XML-code looks like this:
----------------------
<biojava:BlastLikeDataSet program="ncbi-blastn"
version="2.0.11">
<biojava:Header></biojava:Header>
<biojava:BlastLikeDataSet program="ncbi-blastn"
version="2.0.11">
<biojava:Header></biojava:Header>
<biojava:BlastLikeDataSet program="ncbi-blastn"
version="2.0.11">
<biojava:Header></biojava:Header>
<biojava:BlastLikeDataSet program="ncbi-blastn"
version="2.0.11">
<biojava:Header></biojava:Header>..........
-----------------------------------------------------
So the space between Header-tags is empty now. How to force the parser
to take the RawOutput-part from "No hits"-sequences with it? Then I could
get the queries with no hits.
-Petri Pehkonen-
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