You didn't miss it. Predicting 2ndary structure in RNA is a hard problem. You may want to check out Sean Eddy's web site as he was interested in this stuff.
Matthew Karen Petrosyan wrote: > Well, I guess the answer is negative. I've found only > RNATools/Feature classes with an interface. Those > classes do not contain what I'm looking for. > Do I miss anything? > > > On Sun, 10 Feb 2002, Karen Petrosyan wrote: > > >>Hi biojava developers: >> >>I'm wondering if biojava contains any RNA secondary >>structure prediction. I'm looking for a Java class(es) >>that would take a sequence as input and will then >>output a secondary structure being able to predict >>e.g. stem-loops. >> >>I'll appreciate any info/comments. >> >>Best regards, >>Karen >> >> >> > > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > > _________________________________________________________ Do You Yahoo!? Get your free @yahoo.com address at http://mail.yahoo.com _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
