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• • Re: [Biojava-l] pdb parser example Simon Brocklehurst
  • Re: [Biojava-l] pdb parser example Matthew Pocock
• [Biojava-l] mutating subsequence Guoneng Zhong
  • Re: [Biojava-l] mutating subsequence Thomas Down
• [Biojava-l] leader and trailer in Renderers David Huen
  • Re: [Biojava-l] leader and trailer in Renderers Matthew Pocock
  • Re: [Biojava-l] leader and trailer in Renderers David Huen
  • Re: [Biojava-l] leader and trailer in Renderers Matthew Pocock
• [Biojava-l] RevCompSequence - call for input David Waring
  • Re: [Biojava-l] RevCompSequence - call for input Thomas Down
• [Biojava-l] ah hah. Now I know why: it's a bug, perhaps in MSFAlignment Guoneng Zhong
  • RE: [Biojava-l] ah hah. Now I know why: it's a bug, perhaps in MSFAlignment Emig, Robin
• [Biojava-l] A Simple Genbank Parser Runs Out of Memory cantey . lg
  • RE: [Biojava-l] A Simple Genbank Parser Runs Out of Memory Muratet, Michael
  • RE: [Biojava-l] A Simple Genbank Parser Runs Out of Memory Schreiber, Mark
  • RE: [Biojava-l] A Simple Genbank Parser Runs Out of Memory Schreiber, Mark
• [Biojava-l] force it to be dna sequence and not protein Guoneng Zhong
• [Biojava-l] Extended Deadline: March 11; Joint International Conferences in Computer Science; Las Vegas, June 24-27, 2002 Hamid Arabnia
• [Biojava-l] java1.3.1 or older... Geetha Vasudevan
  • Re: [Biojava-l] java1.3.1 or older... Thomas Down
• [Biojava-l] GappedSymbol lists and Features Dudgeon, Tim
  • Re: [Biojava-l] GappedSymbol lists and Features Matthew Pocock
• [Biojava-l] Call for Papers - NETTAB 2002 Paolo Romano
• [Biojava-l] exception with no stacktrace Guoneng Zhong
  • RE: [Biojava-l] exception with no stacktrace Cox, Greg
  • Re: [Biojava-l] exception with no stacktrace Guoneng Zhong
  • RE: [Biojava-l] exception with no stacktrace Cox, Greg
  • Re: [Biojava-l] exception with no stacktrace Guoneng Zhong
• [Biojava-l] Clustalw tutorial Guoneng Zhong
  • Re: [Biojava-l] Clustalw tutorial Simon Brocklehurst
• [Biojava-l] New to the list hbalke
  • Re: [Biojava-l] New to the list David Huen
• [Biojava-l] Recursion of FeatureFilters Schreiber, Mark
  • Re: [Biojava-l] Recursion of FeatureFilters Matthew Pocock
  • [Biojava-l] Matching transfac matrices Stein Aerts
• [Biojava-l] Encountered a Parsing Exception on Genbank cantey . lg
  • RE: [Biojava-l] Encountered a Parsing Exception on Genbank Cox, Greg
  • RE: [Biojava-l] Encountered a Parsing Exception on Genbank Cox, Greg
• [Biojava-l] Re: Sensible toString() methods Michael L. Heuer
• [Biojava-l] Sensible toString() methods Schreiber, Mark
• [Biojava-l] can't compile GCContent June Tantoolvesm
  • Re: [Biojava-l] can't compile GCContent David Huen
  • Re: [Biojava-l] can't compile GCContent June Tantoolvesm
• [Biojava-l] javadoc warnings David Huen
• [Biojava-l] ABITrace David Huen
• [Biojava-l] How does CVS react to an aborted connection? David Huen
• [Biojava-l] Following the Biohackathon Brad Chapman
• [Biojava-l] Hinxton Genome Informatics Meeting [apologies for cross posting] Ewan Birney
• [Biojava-l] Genbank Problem cantey . lg
  • Re: [Biojava-l] Genbank Problem Thomas Down
• [Biojava-l] Applets Kevin Glover
  • Re: [Biojava-l] Applets Thomas Down
  • Re: [Biojava-l] Applets Thomas Down
  • Re: [Biojava-l] Applets Thomas Down
  • Re: [Biojava-l] Applets Kevin Glover
  • Re: [Biojava-l] Applets Thomas Down
  • Re: [Biojava-l] Applets Kevin Glover
  • Re: [Biojava-l] Applets Thomas Down
• [Biojava-l] Build fails on org.biojava.directory.RegistryTest (fixed) Keith James
  • Re: [Biojava-l] Build fails on org.biojava.directory.RegistryTest (fixed) Thomas Down
• [Biojava-l] a newbie interested in trying biojava mandavya
  • Re: [Biojava-l] a newbie interested in trying biojava Thomas Down
• [Biojava-l] Ant-tized das-gui module David Huen
  • Re: [Biojava-l] Ant-tized das-gui module Matthew Pocock
• Subject: Re: [Biojava-l] BLAST from Java Tony Obermeit
• [Biojava-l] Schema and Docs for BioSQL Marc Colosimo
  • Re: [Biojava-l] Schema and Docs for BioSQL Thomas Down
  • Re: [Biojava-l] Schema and Docs for BioSQL Brian Gilman
  • Re: [Biojava-l] Schema and Docs for BioSQL Thomas Down
  • Re: [Biojava-l] Schema and Docs for BioSQL Brian Gilman
  • Re: [Biojava-l] Schema and Docs for BioSQL Thomas Down
• [Biojava-l] Poor das-client performance in OS-X David Huen
  • Re: [Biojava-l] Poor das-client performance in OS-X Brian Gilman
• [Biojava-l] BLAST from Java Russell Smithies
  • Re: [Biojava-l] BLAST from Java Thomas Down
  • Re: [Biojava-l] BLAST from Java Colin Hardman
  • RE: [Biojava-l] BLAST from Java Russell Smithies
  • Re: [Biojava-l] BLAST from Java Simon Brocklehurst
• [Biojava-l] [housekeeping note] experimental changes to bioperl-l and biojava-l list configuration chris dagdigian
• [Biojava-l] Build failing Keith James
  • Re: [Biojava-l] Build failing Thomas Down
  • [Biojava-l] Build failing David Waring
  • Re: [Biojava-l] Build failing Matthew Pocock
  • Re: [Biojava-l] Build failing Brian Gilman
  • RE: [Biojava-l] Build failing David Waring
• [Biojava-l] Reference: Query: B.V.L.S.Prasad
• [Biojava-l] Propsed change for fastaFormat Cox, Greg
  • RE: [Biojava-l] Propsed change for fastaFormat Schreiber, Mark
• [Biojava-l] Antigen found JS/Exploit_based (Norman,CA(InoculateIT),CA(Vet)) virus ANTIGEN_SJMEMEXC1
• [Biojava-l] Antigen found JS/IEStart.gen.c (McAfee4,CA(InoculateIT)) virus ANTIGEN_SESTOMSX02
  • [Biojava-l] Antigen found JS/IEStart.gen.c (McAfee4,CA(InoculateIT)) virus ANTIGEN_SESTOMSX02
• [Biojava-l] Antigen found HTML.VMExploit (CA(Vet),Norman,CA(InoculateIT)) virus ANTIGEN_SJMEMEXC1
• [Biojava-l] 联合购买网推出免费上网活动　ｃｏｂｕｙ cobuy
  • [Biojava-l] 联合购买网推出免费上网活动　ｃｏｂｕｙ cobuy
• [Biojava-l] Creating FASTA file from database query Tony Obermeit
• [Biojava-l] Please Clarify me regarding Bio-Java nagendra b
  • Re: [Biojava-l] Please Clarify me regarding Bio-Java Thomas Down
• [Biojava-l] munge??? Russell Smithies
  • Re: [Biojava-l] munge??? Matthew Pocock
• [Biojava-l] Typos - the saga continues Tony Watkins
  • Re: [Biojava-l] Typos - the saga continues Keith James
• [Biojava-l] Blast2HTMLHandler.java bug Simon Foote
  • Re: [Biojava-l] Blast2HTMLHandler.java bug Simon Brocklehurst
  • Re: [Biojava-l] Blast2HTMLHandler.java bug Colin Hardman
• [Biojava-l] Use of ClustalWAlignmentSAXParser Tony Obermeit
• [Biojava-l] latest cvs update doesn't compile David Huen
• [Biojava-l] What your "Gram mar" hoped she'd wrote Tony Watkins
  • Re: [Biojava-l] What your "Gram mar" hoped she'd wrote David Huen
  • Re: [Biojava-l] What your "Gram mar" hoped she'd wrote Thomas Down
• [Biojava-l] Feature interface changes Matthew Pocock
  • Re: [Biojava-l] Feature interface changes Kalle Näslund
• [Biojava-l] Cambridge: pub this friday? Thomas Down
• [Biojava-l] chat Matthew Pocock
  • Re: [Biojava-l] chat Thomas Down
• [Biojava-l] Typos .. Tony Watkins
• [Biojava-l] More Typos Tony Watkins
• [Biojava-l] Copyright notices Emig, Robin
  • Re: [Biojava-l] Copyright notices Simon Brocklehurst
  • Re: [Biojava-l] Copyright notices Thomas Down
  • RE: [Biojava-l] Copyright notices Schreiber, Mark
  • RE: [Biojava-l] Copyright notices Dickson, Mike
  • RE: [Biojava-l] Copyright notices Emig, Robin
• [Biojava-l] FeatureImpl Schreiber, Mark
• [Biojava-l] Announce: BioJava 1.20 Thomas Down
• [Biojava-l] Blast And Biojava Ratiba Terbaoui
  • Re: [Biojava-l] Blast And Biojava Thomas Down
• [Biojava-l] SequencePanel/Poster Jolyon Holdstock
  • Re: [Biojava-l] SequencePanel/Poster Keith James
• [Biojava-l] genscan gouret
• [Biojava-l] More documentation typos Tony Watkins
  • Re: [Biojava-l] More documentation typos Keith James
• [Biojava-l] Documentation Hyperlink error Tony Watkins
• Re: [Biojava-l] Anyone used GentleWare's Poseidon UML_CASE tool? Hilmar Lapp
  • Re: [Biojava-l] Anyone used GentleWare's Poseidon UML_CASE tool? Simon Brocklehurst
  • Re: [Biojava-l] Anyone used GentleWare's Poseidon UML_CASE tool? Howard Ungar
• [Biojava-l] constrained annotations Matthew Pocock
• [Biojava-l] Packed DNA Symbol List David Huen
  • Re: [Biojava-l] Packed DNA Symbol List Matthew Pocock
• [Biojava-l] İŞTE MERAK EDİLEN BİR KONU Medyum
• [Biojava-l] RNA secondary structure prediction Karen Petrosyan
  • [Biojava-l] Re: RNA secondary structure prediction Karen Petrosyan
  • Re: [Biojava-l] Re: RNA secondary structure prediction Matthew Pocock
  • Re: [Biojava-l] Re: RNA secondary structure prediction David Huen
• [Biojava-l] CVS biojava-live and 1.2 Schreiber, Mark
  • Re: [Biojava-l] CVS biojava-live and 1.2 chris dagdigian
  • Re: [Biojava-l] CVS biojava-live and 1.2 Matthew Pocock
• [Biojava-l] More spelling in Documentation Tony Watkins
  • Re: [Biojava-l] More spelling in Documentation David Huen
• [Biojava-l] 联合购买网向您拜年 cobuy
  • [Biojava-l] 联合购买网向您拜年 cobuy
• [Biojava-l] NCBI Genbank wanner . de
  • Re: [Biojava-l] NCBI Genbank Thomas Down
• [Biojava-l] Typo in documentation David Waring
• [Biojava-l] Restricting annotations Matthew Pocock
• [Biojava-l] Feature key table Wiepert, Mathieu
• [Biojava-l] spam, viral email & info needed for the next Open Bio Foundation newsletter chris dagdigian
• [Biojava-l] WORLDS FIRST Player vs Player Blackjack P2Pblackjack
• [Biojava-l] Spelling in Documentation Tony Watkins
  • Re: [Biojava-l] Spelling in Documentation Matthew Pocock
  • Re: [Biojava-l] Spelling in Documentation Thomas Down
• [Biojava-l] Compare Bioperl and Biojava Pls. Anu Padki
  • Re: [Biojava-l] Compare Bioperl and Biojava Pls. Simon Brocklehurst
  • Re: [Biojava-l] Compare Bioperl and Biojava Pls. Guoneng Zhong
  • Re: [Biojava-l] Compare Bioperl and Biojava Pls. Thomas Down
  • Re: [Biojava-l] Compare Bioperl and Biojava Pls. Ewan Birney
  • Re: [Biojava-l] Compare Bioperl and Biojava Pls. David Huen
  • Re: [Biojava-l] Compare Bioperl and Biojava Pls. Thomas Down
  • Re: [Biojava-l] Compare Bioperl and Biojava Pls. Thomas Down
• [Biojava-l] Dag-edit again Petri Pehkonen
  • Re: [Biojava-l] Dag-edit again Tom Oinn
• [Biojava-l] DAG-viewer Petri Pehkonen
• [Biojava-l] Flash Website Builder Mark
• [Biojava-l] HitSectionSAXParser and BlastLikeVersionSupport Roy Park
  • Re: [Biojava-l] HitSectionSAXParser and BlastLikeVersionSupport Simon Brocklehurst
• [Biojava-l] New package: org.biojava.bibliography Thomas Down
• [Biojava-l] Announce: BioJava 1.2rc1 Thomas Down
• [Biojava-l] How to predict RNA tertiary structure "이유진"
• [Biojava-l] Documentation Overview spelling correction Tony Watkins
  • Re: [Biojava-l] Documentation Overview spelling correction Thomas Down
  • Re: [Biojava-l] Documentation Overview spelling correction Jeff Shang
  • biojava website ( was Re: [Biojava-l] Documentation Overview spelling correction) chris dagdigian
  • Re: biojava website ( was Re: [Biojava-l] Documentation Overview spelling correction) Thomas Down
• [Biojava-l] GCG Format Stine, Matt
  • Re: [Biojava-l] GCG Format Thomas Down
• [Biojava-l] taxa Matthew Pocock
  • Re: [Biojava-l] taxa Tom Oinn
  • Re: [Biojava-l] taxa Matthew Pocock
• [Biojava-l] Announce: BioJava Bootcamp 2002 Thomas Down
  • Re: [Biojava-l] Announce: BioJava Bootcamp 2002 Thomas Down
• [Biojava-l] taxanomical API Matthew Pocock
  • Re: [Biojava-l] taxanomical API Tom Oinn
  • RE: [Biojava-l] taxanomical API Schreiber, Mark
  • RE: [Biojava-l] taxanomical API Alan Robinson
  • Re: [Biojava-l] taxanomical API Thomas Down
• [Biojava-l] Help:Running local ClustalW.exe through java without showing DOSwindow Subba.Raju
  • Re: [Biojava-l] Help:Running local ClustalW.exe through java without showing DOS window Matthew Pocock
• [Biojava-l] docs in help format? Russell Smithies
  • [Biojava-l] parsing Annotation page of NCBI SAMEER MOHTA
• [Biojava-l] RE: Biojava-l digest, Vol 1 #546 - 4 msgs Russell Smithies
• [Biojava-l] Re: This tangled web on which I'm laid intwined Tony Obermeit

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