On Sat, 23 Feb 2002, June Tantoolvesm wrote:
> Hello,
>
> I hope this hasn't already been answered in the mail
> archive, but if it has I couldn't find it, sorry. I tried
> to compile the first example in the tutorial (GCContent),
> and I get the following error:
>
>
> GCContent.java [23:1] Incompatible type for =. Can't
> convert Sequence to Sequence.
> Sequence seq = stream.nextSequence();
> ^
> GCContent.java [25:1] No method found matching length()
> for (int pos = 1; pos <= seq.length(); ++pos) {
> ^
> GCContent.java [26:1] No method found matching
> symbolAt(int)
> Symbol sym = seq.symbolAt(pos);
> ^
> GCContent.java [26:1] Cannot parse initializer
> Symbol sym = seq.symbolAt(pos);
> ^
> GCContent.java [30:1] No method found matching getName()
> System.out.println(seq.getName() + ": " +
> ^
> GCContent.java [31:1] No method found matching length()
> ((gc * 100.0) /
> seq.length()) +
> ^
Seems not to be finding the biojava jar.
>
> My classpath is
>
>
>CLASSPATH=C:\biojava\biojava-1.20.jar;C:\biojava\bytecode-0.90.jar;C:\biojava\xerces.jar;.
>
I don't use Windows regularly enough to recall correctly but is the
separator in the CLASSPATH ";" rather than the ":" used in Linux?
If there's something equivalent to:-
echo $CLASSPATH
it might be useful to check that it is really set.
Hope someone using Windows will be able to clarify.
Which Java are you using?
Regards,
David Huen
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