Hi,
In the course of debugging this parser program I am doing for ClustalW
report, I realized that all along it has been thinking that it is a
peptide sequence alignment. This is the code fragment:
AlignmentFormat format = new MSFAlignmentFormat();
Alignment alignment = format.read(reader);
Convince the program that the file that created the "reader" is an
alignment of dna sequences?
Thanks,
G
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