On Sun, 17 Mar 2002, Matthew Pocock wrote: > Hi Mike, > > We don't have a CGI client for fetching genbank, embl or swissprot > files. There have been more than a few requests for that functionality > recently. There is a BioFetch client (org.biojava.bio.seq.db.biofetch), > which may do what you need.
I am about 1 week GenBank should be changing the publicising an "official" CGI programmatic gateway system. I'll ping NCBI again about th.. this is the CGI interface you want to code against... > > I'll take a look at porting Bio::DB::BenBank to BioJava this weekend. > > Matthew > > Michael E. Smoot wrote: > > Hello, > > > > I'm currently thinking about transitioning a cgi script that uses > > Bioperl's Bio::DB::GenBank code to a Java servlet to streamline a project > > I'm working on. My question is whether BioJava provides a class or > > classes that can accomplish the same thing as Bio::DB::GenBank? > > Specifically, I'm looking for the ability to fetch a GenBank file from > > NCBI given either an id or accession number. I've found the code to > > parse these files, but not fetch them. > > > > > > thanks, > > Mike > > > > > > _______________________________________________ > > Biojava-l mailing list - [EMAIL PROTECTED] > > http://biojava.org/mailman/listinfo/biojava-l > > > > > > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > ----------------------------------------------------------------- Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420 <[EMAIL PROTECTED]>. ----------------------------------------------------------------- _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
